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BTW, I think that the non-processed crops above illustrate that Nikon does apply NR in camera before saving raw files. There is chroma noise on the 10-20 pixel scale, as you can see in the monitor stand, but none whatsoever on the 1 pixel scale. Local small scale chroma noise doesn't appear, whereas local small scale luma noise does. How can that be, bearing in mind that it's a standard bayer sensor? Some people are going to claim that the Nikon sensor has a mysterious ability to see noise in black and white, despite being a 3 colour device, but I think there is a much easier explanation: Nikon cameras have excellent in-built chroma noise reduction which blends out high frequency chroma noise with a blending radius appropriate to the voltage levels coming off the sensor. It's an excellent way of reducing noise, and it's precisely the method I normally use in Photoshop to noise-reduce noisy files, as well as being the method used by all 3rd party noise reduction software. Some astro-photographers aren't too keen on it, I understand, for obvious reasons, but generally it's a very useful feature. The D700 essentially has NeatImage/NoiseNinja built in, and impressively, it can do it at 8 frames per second, which makes it a low-light sports shooter's wet dream come true.
Equally, one can see easily from this crop that desktop chroma noise reduction is going to reap big rewards in the Canon file, whereas there's not much more to be gained in the Nikon file, unless you use a larger radius, and then the edges will go water-colourish. So my view is that the D700 iso 12800 raw file has already had some very useful noise reduction, but the Canon file seems to catch up once it has similar treatment on the desktop.
Finally, a couple of warnings to those considering using a 1Ds3 for iso 12800 work (as I do): desktop processing is time consuming, and a D700 is going to pay for itself really quickly if you shoot at those isos often. Moreover, the 1Ds3 has amp noise in the bottom right corner in very low light at very high iso, and correcting that isn't always easy, and will waste even more of your time.
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