I still don't buy it. In the paper "From the series of articles on lens names: Distagon, Biogon and Hologon" by Dr. Nasse of Zeiss, he specifically states:
Lenses with a very large beam tilt react in a much more sensitive manner to a change of refractive index in the image space caused by filter plates in front of the sensor (such as low pass and IR-blocking filters). If the filter plate is not considered in the design of the lens, the edge definition will suffer. The effect of the additional path through the glass grows exponentially with the beam inclination. A Distagon which never achieves more than 20° beam tilt in the corner of the image reacts more tolerantly than a symmetrical wide- angle lens, which might reach a 45° tilt. This is why filters in digital Leicas are very thin – to remain compatible with older optics.
If the filter is significantly thicker, the contrast transfer for the image edge becomes worse for tangential structures. The focus is shifted to greater distances for tangential structures by the additional path through the glass. If the best edge definition is to be achieved, then all that can be done is to stop down further.
The M9's sensor was nowhere near like BSI, based on ~10 year old tech with deep pixel wells, though microlenses were optimized. It did not exhibit significant edge smearing (color shift remained a problem). It had a <1mm thick cover glass, IIRC.
The M240's sensor was designed with very shallow pixel wells, yet the cover glass remained very thin (IR contamination remains a minor problem).
Shallow pixel wells will help reduce or eliminate color shifts. It remains the sensor topping thickness that will affect edge smearing. This isn't to say the a7RII won't be more RF lens friendly, but this will be primarily due to sensor toppings, and remains to be determined.