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I have the D800E and I've had problems with moire ONCE, and it was when shooting some product shots of technical sports wear. I tried everything in CS5 to get rid of it and nothing worked. I then tried Capture NX, which came free with the camera, it was all gone with a click of a button!
If I was shooting video, I would get the normal D800, just to be on the safe side. Other than that, D800E all the way.
Other than that I've had a couple of problems with my E.
Randomly it takes over 10 seconds to review an image, it just sits there with the green light on.
When shooting with a speedlight on the camera and in poor light, it tends to backfocus like crazy, no problems if I remove the flash. It's most visible on my 24 1.4G and 85 1.4G.